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Hi everyone,

 

I created a Matlab script which can both output the results txt file via ‘GetTextFile’ and read the results of a Huygens PSF analysis directly. The problem is that these do not match.

 

Excerpt from my code:

newWin = TheSystem.Analyses.New_HuygensPsf();

...

newWin.ApplyAndWaitForCompletion();

newWin_Results = newWin.GetResults();

data = newWin_Results.DataGrids(1).Values.double;

newWin_Results.GetTextFile(outFolder)

 

Txt File Data Snippet:

data variable above snippet:

Is “DataGrids(1).Values.double;” the proper way to extract this information from GetResults? The text file also matches what standalone OpticsStudio provides me so I am taking that data to be the truth.

Hi @BeauDiddley,

 

I can see that you are using:

newWin_Results.DataGrids(1)

Usually, a simple Huygens PSF will return a single DataGrid at index 0. How did you have a second DataGrid at index 1? I’m asking because if the settings are different it could explain the discrepancy.

Take care,

 

David


@David.Nguyen ,

 

Thanks for the reply. I believe this would be a case of Matlab indexes start at 1, not 0.

 


Oh dear, I had completely forgot about this peculiarity of MATLAB. Apologies.

When I try to do it in Python, it seems almost ok for me. But, I have to apply a transpose operation to the values! Also, for some reason, the first line is actually the last line. When I use this snippet in a default lens file:

import numpy as np

huygens_psf = TheSystem.Analyses.New_HuygensPsf()
huygens_psf.ApplyAndWaitForCompletion()
huygens_psf_results = huygens_psf.GetResults()

datagrid = huygens_psf_results.GetDataGrid(0).Values
npData = transpose(reshape(datagrid, datagrid.GetLength(0), datagrid.GetLength(1)))
npData = np.array(npData)

print(npData[:6, :6])

huygens_psf.Close()

I get this result:

[[0.37383706 0.39789254 0.42147975 0.44441609 0.46652057 0.48761576]
[0.39789254 0.42349592 0.44860091 0.47301315 0.49654 0.51899261]
[0.42147975 0.44860091 0.47519413 0.50105354 0.52597507 0.54975868]
[0.44441609 0.47301315 0.50105354 0.52832018 0.5545979 0.57967578]
[0.46652057 0.49654 0.52597507 0.5545979 0.58218263 0.60850784]
[0.48761576 0.51899261 0.54975868 0.57967578 0.60850784 0.63602343]]

And this is the text output:

Can you confirm that you see the same? It could have to do with the Python reshape function in the boilerplate code, I’ll check that.

Take care,


David


@David.Nguyen ,

 

Haha! Happens to all of us! Transposing via flipud solved the issue for me, but my first line is in the correct spot… weird.

 

Thanks a lot! My PSFs are pretty symmetric, which made this difficult to diagnose on my own.


@BeauDiddley

 

I kid you not, I actually spent several minutes trying to understand how you got the one there, asking myself: “how on earth do you get another DataGrid from this analysis?”. Completely oblivious of the MATLAB behaviour...

I think the issue is in my reshape function, I recycled an old one that I had modified. Anyway, happy to hear your are sorted :)

Take care,

 

David


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