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I have an optical system and I want to analyse it in atmosphere and cloudy, rainy weather. How can I simulate cloudy and rainy weather in zemax

You might want to consider using Mie scattering.  Here are a few links that discuss modeling turbulence and fog in OpticStudio that may be of some help:

Atmospheric turbulence

Atmospheric Modeling / Optical Turbulence

Fog Effects on Time-of-Flight Imaging Investigated by Ray-Tracing Simulations


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